Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs17182559 | chr21:47703952 | T/C | 5.18E-11 | 499 | 36.88 | 39.52 | 7.4 | KM Plot |
KIRC | rs17302700 | chr21:47969793 | C/T | 2.71E-5 | 498 | 37.2 | 37.33 | 6.87 | KM Plot |
KIRC | rs17469458 | chr20:45024280 | A/G | 4.29E-13 | 509 | 37.75 | 32.52 | 2.17 | KM Plot |
KIRC | rs17483887 | chr22:28423844 | C/T | 1.32E-5 | 509 | 37.37 | 40 | 7.4 | KM Plot |
KIRC | rs17544516 | chr2:67568092 | A/G | 1.75E-7 | 509 | 37.18 | 37.77 | 2.03 | KM Plot |
KIRC | rs17545245 | chr2:67636837 | A/G | 2.2E-7 | 507 | 37.33 | 37.7 | 2.03 | KM Plot |
KIRC | rs17545301 | chr2:67638349 | G/A | 2.2E-7 | 507 | 37.33 | 37.7 | 2.03 | KM Plot |
KIRC | rs17545329 | chr2:67639135 | T/G | 2.2E-7 | 507 | 37.33 | 37.7 | 2.03 | KM Plot |
KIRC | rs17586784 | chr6:25935227 | C/A | 0.000109 | 504 | 37.73 | 31.53 | 4.1 | KM Plot |
KIRC | rs17587597 | chr6:25986451 | G/A | 9.33E-9 | 500 | 37.67 | 33.93 | 3.37 | KM Plot |
KIRC | rs17611151 | chr4:169142324 | C/A | 2.24E-8 | 507 | 37.03 | 39.23 | 3.1 | KM Plot |
KIRC | rs17649291 | chr4:169170344 | G/A | 2.18E-8 | 508 | 37.35 | 37.67 | 3.1 | KM Plot |
KIRC | rs17705720 | chr4:169166557 | A/C | 2.17E-8 | 508 | 37.18 | 39.23 | 3.1 | KM Plot |
KIRC | rs17786132 | chr3:48249420 | C/G | 1.36E-5 | 494 | 37.75 | 37.6 | 21.12 | KM Plot |
KIRC | rs17799450 | chr5:59029345 | A/G | 0 | 509 | 37.03 | 41 | 0.07 | KM Plot |